Preservation of the shell matrix protein dermatopontin in 1500 year old land snail fossils from the Bonin islands     

Isao Sarashina  Yoshiki Kunitomo  Minoru Iijima  Satoshi Chiba  Kazuyoshi Endo   《Organic Geochemistry》2008,39(12):1742

Organic molecules such as proteins can be preserved in certain fossils. The bulk properties of fossil proteins of both vertebrates and invertebrates have been studied for over half a century. Named proteins have so far been identified, however, only in vertebrate fossils, such as collagen from mammoth bones. Using immunological assays, we examined 1500 year old fossils of the extinct land snail Mandarina luhuana from the Bonin islands for the presence of dermatopontin, a molluscan shell matrix protein. First, we examined the shell microstructure and mineralogy of the fossil shells using scanning electron microscopy (SEM) and powder X-ray diffraction (XRD) in order to estimate the extent of diagenetic alteration. The results suggest that the original microstructure and mineralogy of the shells are preserved. Antiserum raised against the Type-1 dermatopontin fragment of the living land snail Euhadra brandtii showed significant immunological reactivity with the extracts from the fossil shells of M. luhuana. Immunological binding curves drawn for the shell extracts of extant M. aureola and the extinct M. luhuana confirmed the presence of dermatopontin in the fossil shells and provided an estimate that about 75–98% of the original dermatopontin was lost from the M. luhuana fossils. This is the first report of a named protein being identified in invertebrate fossils.  相似文献   

Scattering of Semidiurnal Internal Kelvin Wave at Step Bottom Topography     

Yuji?KawamuraEmail author  Yujiro?Kitade  Masaji?Matsuyama 《Journal of Oceanography》2005,61(1):59-68

A three-dimensional, multi-level model was used to study the energy dissipation of semidiurnal internal Kelvin waves due to their interaction with bottom topography. A simplified topography consisting of a channel with an additional shallow bay was used to clarify the wave’s scattering process. When the first mode semidiurnal internal wave given at an open boundary arrives at the bay mouth, higher-mode internal waves are generated at a step bottom of the bay mouth. As a result, the energy of the first mode internal Kelvin wave is effectively decayed. The decay rate of the internal Kelvin wave depends on both the width and length of the additional bay. The maximum decay rate was found when a resonance condition occurs the bay, that is, the bay length is equal to a quarter of wave length of the first mode internal wave on the shallow region. The decay rate in the wide bay cases is higher than that in a narrow case, due to a contribution from the scattering due to the Poincare wave that emanates from the corners of the bay head. The decay rate with the additional bay is 1.1–1.8 times that of the case without the additional bay. The decay rate due to the scattering process is found to be of the same order as that of the internal and bottom friction.  相似文献   

Japan-equator XBT sections in late November 1989 and in early December 1991     

Jiro Yoshida  Hideo Sudo  Masaji Matsuyama  Yoshihiro Kurita  Yuji Mine 《Journal of Oceanography》1993,49(1):121-129

A comparison between Japan-equator XBT sections along 150°E in late November 1989 and along 140°E in early December 1991 is made. The warmest surface water above 29°C diminished to the south of 2–4°N and the surface mixed layer noticeably decreased in thickness in the equatorial region in December 1991; besides, the North Equatorial Countercurrent was intensified. This is considered to be a manifestation of changes in the surface layer of the western equatorial Pacific in the mature phase of El Niño.  相似文献   

Effects of scattering and resonance on energy dissipation of an internal tide in a narrow shelf     

Yuji Kawamura  Yujiro Kitade 《Journal of Oceanography》2007,63(1):15-25

The effects of scattering and resonance on the energy dissipation of an internal tide were investigated using a two-dimensional model which is a reassembled version of the theoretical generation model devised by Rattray et al. (1969) for internal tide. The basic character of the scattering process at the step bottom was first investigated with a wide shelf model. When the internal wave incited from a deep region (Region II) into the shallow shelf region (Region I), a passing wave into the shallow region, a reflected wave into the deep region, and a beam-like wave, i.e. a scattered wave (SW), emanated at the step bottom. The SW, which consists of the superposition of numerous internal modes, propagated upward/downward into both regions. The general properties of the SW were well expressed around the shelf edge, even in the present model with viscosity effect. The amplitude of the SW decreased dramatically when the depth of the velocity maximum of the incident internal wave in Region II corresponded with the depth of the shelf edge. In the narrow shelf model, where the decay distance of the internal wave in Region I is longer than the shelf width, the incident internal wave reflected at the coast to form a standing wave. When the internal wave in Region I is enhanced by the resonance, the energy of the SW in Region II is also intensified. Furthermore, the energy of the modes in Region II predominated when the velocity maximum is identical to that of the dominant mode in Region I. These results suggest that the spatial scale of shelf region is a very important factor governing the energy dissipation of the internal tide through reflection and scattering in a narrow shelf.  相似文献   

Standing stocks and production rates of phytoplankton and planktonic copepods in the Inland Sea of Japan   总被引：1，自引：0，他引：1  

Shin-ichi Uye  Hiroshi Kuwata  Takuo Endo 《Journal of Oceanography》1986,42(6):421-434

Standing stocks and production rates of phytoplankton and planktonic copepods were investigated at 15 stations in the Inland Sea of Japan during four cruises in October–November 1979, January, April and June 1980. The overall mean of phytoplankton biomass was relatively constant during the study period, ranging from 2.3 mg chl.a m^–3 in April to 3.6 mg chl.a m^–3 in October–November. Primary production was low in January (mean: 90 mg C m^–2 d^–1), but higher than 375 mg C m^–2 d^–1 on the other occasions. Integrated annual primary production was 122 g C m^–2 yr^–1. In terms of carbon weight,Paracalanus parvus was the most important copepod species. The variation of the mean copepod biomass (range: 7.6 mg C m^–3 in April to 20.2 mg C m^–3 in June) was smaller than that of copepod production, which was estimated by the Ikeda-Motoda's physiological method. Copepod producion was low in cold seasons (0.6 and 0.9 mg C m^–3 d^–1 in January and April, respectively), and increased, following the elevation of primary production, to 4.9 mg C m^–3 d^–1 in June. Annual copepod production was 33.7 g C m^–2 yr^–1, of which herbivore (secondary) production was 26.4 g C m^–2 yr^–1 (21.7% of primary production). The ratios of pelagic planktivorous fish catch and total fish catch to the primary production were 0.82 and 1.8%, respectively, indicating very high efficiency in exploiting fishery resources in the Inland Sea of Japan.  相似文献   

U-Pb Age Determination for Seven Standard Zircons using Inductively Coupled Plasma–Mass Spectrometry Coupled with Frequency Quintupled Nd-YAG (λ = 213 nm) Laser Ablation System: Comparison with LA-ICP-MS Zircon Analyses with a NIST Glass Reference Material     

Yuji Orihashi    Shun'ichi Nakai  Takafumi Hirata 《Resource Geology》2008,58(2):101-123

This paper evaluates the analytical precision, accuracy and long‐term reliability of the U‐Pb age data obtained using inductively coupled plasma–mass spectrometry (ICP‐MS) with a frequency quintupled Nd‐YAG (λ = 213nm) laser ablation system. The U‐Pb age data for seven standard zircons of various ages, from 28 Ma to 2400 Ma (FCT, SL13, 91500, AS3, FC1, QGNG and PMA7) were obtained with an ablation pit size of 30 μm diameter. For ²⁰⁷Pb/²⁰⁶Pb ratio measurement, the mean isotopic ratio obtained on National Institute of Standards and Technology (NIST) SRM610 over 4 months was 0.9105 ± 0.0014 (n = 280, 95% confidence), which agrees well with the published value of 0.9096. The time‐profile of Pb/U ratios during single spot ablation showed no significant difference in shape from NIST SRM610 and 91500 zircon standards. These results encouraged the use of the glass standard as a calibration standard for the Pb/U ratio determination for zircons with shorter wavelength (λ = 213 nm) laser ablation. But ²⁰⁶Pb/²³⁸U and ²⁰⁷Pb/²³⁵U ages obtained by this method for seven zircon standards are systematically younger than the published U‐Pb ages obtained by both isotope dilution–thermal ionization mass spectrometry (ID‐TIMS) and sensitive high‐resolution ion‐microprobe (SHRIMP). Greater discrepancies (3–4% younger ages) were found for the ²⁰⁶Pb/²³⁸U ages for SL13, AS3 and 91500 zircons. The origin of the differences could be heterogeneity in Pb/U ratio on SRM610 between the different disks, but a matrix effect accuracy either in the ICP ion source or in the ablation‐transport processes of the sample aerosols cannot be neglected. When the ²⁰⁶Pb/²³⁸U (= 0.2302) newly defined in the present study is used, the measured ²⁰⁶Pb/²³⁸U and ²⁰⁷Pb/²³⁵U ages for the seven zircon standards are in good agreement with those from ID‐TIMS and SHRIMP within ±2%. This suggests that SRM610 glass standard is suitable for ICP‐MS with laser ablation sampling (LA‐ICP‐MS) zircon analysis, but it is necessary to determine the correction factor for ²⁰⁶Pb/²³⁸U by measuring several zircon standards in individual laboratories.  相似文献   

Numerical simulation of migration–accumulation of oil resources     

Yirang Yuan  Yuji Han 《Computational Geosciences》2008,12(2):153-162

Numerical simulation of oil migration and accumulation is to describe the history of oil migration and accumulation in basin evolution. It is of great value to the evaluation of oil resources and to the determination of the location and amount of oil deposits. This thesis discusses the characteristics of petroleum geology and permeation fluid mechanics. For the three-dimensional problems of Dongying hollow of Shengli Petroleum Oil Field, it puts forward a new model and a kind of modified method of upwind finite difference fractional steps implicit interactive scheme. For the famous hydraulic experiment of secondary migration–accumulation, the numerical simulation test has been done, and both the computational and experimental results are basically identical. For the actual problem of Dongying hollow, the numerical simulation test and the actual conditions are basically coincident. Thus, the well-known problem has been solved.  相似文献   

Flux determination over a smooth surface under strongly unstable conditions     

Michiaki Sugita  Tetsuya Hiyama  Nobuhiko Endo  Shao-Fen Tian 《Boundary-Layer Meteorology》1995,73(1-2):145-158

Careful micrometeorological measurements on an empty parking lot allowed determination of the surface fluxes of sensible heatH and of momentum by applying profile equations derived from Monin-Obukhov similarity theory with two sets of the stability correction function for momentum _m and sensible heat _h . These fluxes were compared with reference values ofH independently determined by means of an eddy correlation technique. In general, better agreement was found betweenH values derived from profiles with the stability functions of Brutsaert (1992) and referenceH values, than when the Businger-Dyer functions were used to deriveH. The disagreement in the latter comparison was especially serious under strongly unstable conditions, with the value ofy=–z/L (wherez is the height andL is the Obukhov length) larger than 10. A closer look at the procedure for calculatingH from the profiles revealed that the large differences between theH values derived with these two different versions of the stability correction functions were caused by the small differences of the _h values, and not by the larger differences of the _m values. This result stems from the strong sensitivity of the resultingH values on the choice of _h .  相似文献   

Cation distribution in pentlandites (Fe,Ni)9S8: Dependence on pressure and temperature and kinetics of the cation exchange reaction     

Katsuhiro Tsukimura  Hiromoto Nakazawa  Tadashi Endo  Osamu Fukunaga 《Physics and Chemistry of Minerals》1992,19(4):203-212

This paper describes the distribution of Fe and Ni between the octahedral and tetrahedral sites in pentlandite (Fe,Ni)₉S₈. The dependence of the distribution on pressure and temperature and the activation energy of the cation exchange reaction were determined through annealing experiments. Synthetic crystals were annealed at 433–723 K and pressures up to 4 GPa, and natural crystals were annealed at 423, 448 and 473 K in evacuated silica capillary tubes for various durations. The cation distributions in the synthetic crystals were determined with an X-ray powder method employing the anomalous dispersion effect of CuK. and FeK radiations, while those of natural crystals were calculated from the cell dimensions. The values of U, S and V for the Fe/Ni exchange reaction are –6818 J mol^–1, 20.52 J K^–1 mol^–1, and 6.99 × 10^–6 m³ mol^–1, respectively. The dependence of the Fe/Ni distribution on pressure (Pa) and temperature (Kelvin) was determined as lnK = 2.47+8.20 × 10² T ^–1+8.41 x 10^–7 T ^–1 P, where K = (Fe/Ni)_octahedral /(Fe/Ni)_tetrahedral. The activation energy of the cation exchange reaction was 185 kJ mol^–1.  相似文献   

Slip-weakening distance in dynamic rupture of in-slab normal-faulting earthquakes   总被引：1，自引：0，他引：1  

Takeshi Mikumo  Yuji Yagi 《Geophysical Journal International》2003,155(2):443-455

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